Welcome to RNAmigos, a tool for predicting ligand binding preferences in RNA binding sites.

Update 28.11.2023
The web-server is currently not maintained but if you would like to use the model you can do so using our GiHub repository.
The latest version of RNAmigos is also available as a Colab notebook here.

Citing

@article{oliver2020augmented,
  title={Augmented base pairing networks encode RNA-small molecule binding preferences},
  author={Oliver, Carlos and Mallet, 
  Vincent and Gendron, Roman Sarrazin and Reinharz, 
  Vladimir and Hamilton, William L and Moitessier, 
  Nicolas and Waldisp{\"u}hl, J{\'e}r{\^o}me},
  journal={Nucleic acids research},
  volume={48},
  number={14},
  pages={7690--7699},
  year={2020},
  publisher={Oxford University Press}
}

@article{carvajal2023semi,
  title={Semi-supervised learning and large-scale docking data accelerate RNA virtual screening},
  author={Carvajal-Patino, Juan G and Mallet, Vincent and Becerra, David and Nino, L Fernando and Oliver, Carlos and Waldispuhl, Jerome},
  journal={bioRxiv},
  pages={2023--11},
  year={2023},
  publisher={Cold Spring Harbor Laboratory}
}

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